Basic Information
VIS ID
TVIS30004193
Fusion event
HIV-ELP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
111650276/108887996 (Hg38)
End
111650276/108887996 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA9E
Target gene
ELP1
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-26b-5p ; hsa-mir-296-3p ; hsa-mir-93-3p ; hsa-mir-92a-3p ; hsa-mir-24-3p ; hsa-mir-323a-5p
Nearest miRNA
hsa-let-7a-1/Upstream/2286974; hsa-mir-12126/Downstream/158233;
Nearest TSS
ENST00000422679/Upstream/25730; ENST00000466200/Downstream/1688;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/32132, chr9-CpG: 13/Downstream/12774
Upstream sequence
ttcctaaaaagttaaacatccacttaccacgggatgtggcattcctactcctgtccccataaagacctgcactagaatgttcatggctgcgttattcata
Downstream sequence
ataaccccaaactgaaaacaatccaaatgtacatcaactggtaaatcaacaaattctgacatatacatataatgggatactattcagcaatacaaaggaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate