VISDB Viral Integration Site DataBase

VIS ID

TVIS30004199

Fusion event

HIV-TRAF1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q33.2

Reference genome

Start

End

123684958/120922680 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-mir-378a-3p ; hsa-mir-7160-5p ; hsa-mir-7112-3p ; hsa-mir-6499-3p ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-7162-3p ; hsa-mir-6890-3p ; hsa-mir-7847-3p ; hsa-mir-4291 ; hsa-mir-6880-5p ; hsa-mir-6894-5p ; hsa-mir-765 ; hsa-mir-7154-3p ; hsa-mir-766-5p ; hsa-mir-6077 ; hsa-mir-3665 ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-922 ; hsa-mir-320e ; hsa-mir-1273g-3p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-744-3p ; hsa-mir-6501-5p ; hsa-mir-4423-5p ; hsa-mir-6131 ; hsa-mir-4781-3p ; hsa-mir-31-3p ; hsa-mir-3976 ; hsa-mir-483-5p ; hsa-mir-665 ; hsa-mir-6807-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-769-5p ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-3152-5p ; hsa-mir-6514-3p ; hsa-mir-6894-3p ; hsa-mir-6836-3p ; hsa-mir-4763-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-361-3p ; hsa-mir-4774-3p ; hsa-mir-1251-3p ; hsa-mir-4276 ; hsa-mir-4711-3p ; hsa-mir-550a-3p ; hsa-mir-200c-5p ; hsa-mir-302a-5p ; hsa-mir-6870-3p ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-4793-5p ; hsa-mir-5196-3p ; hsa-mir-4302 ; hsa-mir-6733-3p ; hsa-mir-382-3p ; hsa-mir-136-3p ; hsa-mir-1254 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-3116 ; hsa-mir-3202 ; hsa-mir-3714 ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-4533 ; hsa-mir-605-3p ; hsa-mir-6086 ; hsa-mir-6511a-5p

Nearest miRNA

hsa-let-7a-1/Upstream/677630; hsa-mir-12126/Downstream/1197402;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/27869, chr9-CpG: 86/Downstream/5813

Upstream sequence

TAGCTCCTGAAAATGTCTCTCTGGCCTATCACACTTCCAAATGTGTCTCTTATTCCTAGAAGCACCGTTTGACAGAGCTCAGGACGTGAGCTGATAATGG

Downstream sequence

TCTCTCCCCACCTAAAGGCAAACAGAGGCAGACAGAACCATCTAGATGaggagtttgctaaccttttttatgtaaaggggtggatagtaaatattttggg