Basic Information
VIS ID
TVIS30004208
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
130782704/128020425 (Hg38)
End
130782704/128020425 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/150930; hsa-mir-12126/Downstream/224296;
Nearest TSS
ENST00000422679/Upstream/39912; ENST00000472769/Downstream/36937;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/39218, chr9-CpG: 103/Downstream/46831
Nearby gene
FAM102A(No orient, 39892)
Upstream sequence
agtgctaggattacaggcatgagccaccatgcccggccaaaagtttgttgttttaagctgctaagttgggggtgggtgggtggatgatatgcaggcagcc
Downstream sequence
atagctaactaataGTTTCCCTGTCTTTTCAGTTATTTTCTCTTTGGCCTGGGGCCCTTGACATACCCCTGTTTGGCTCGGATAGAAGCAGAAATACTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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