Basic Information
VIS ID
TVIS30004237
Fusion event
HIV-CAMSAP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
138752634/135860788 (Hg38)
End
138752634/135860788 (Hg38)
Orient
+
Location type
Intronic
Target gene
CAMSAP1
miRNAs that regulate target gene
hsa-mir-103a-3p ; hsa-mir-19b-3p ; hsa-mir-16-5p ; hsa-mir-877-5p ; hsa-mir-92b-3p ; hsa-mir-4762-3p ; hsa-mir-4303 ; hsa-mir-4468 ; hsa-mir-6751-3p ; hsa-mir-1199-5p ; hsa-mir-6507-5p ; hsa-mir-497-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-6838-5p ; hsa-mir-335-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-3942-3p ; hsa-mir-548aw ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-455-5p ; hsa-mir-33a-3p ; hsa-mir-409-3p ; hsa-mir-5583-5p ; hsa-mir-3129-3p ; hsa-mir-19a-3p
Nearest miRNA
hsa-let-7a-1/Upstream/1009981; hsa-mir-126/Downstream/658780;
Nearest TSS
ENST00000422679/Upstream/34379; ENST00000423793/Downstream/1773;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/41535, chr9-CpG: 213/Downstream/45828
Upstream sequence
TCTTCTTTAAGGTGTCTAGTTCTCTTTTTAATGTCCATCATTTTAAATATCCTGTTATCTTTCACCCATGTCTTGGTGCCAAATCAGCTGCAGTGCCTGC
Downstream sequence
TTTCCCTGCGTGGTTTCTGATTTTTCAAAGAGTTTGTCTTCCAGCAGGGGTTCTCCTCAGTGGGCAGCCAGCATGCCCTGGCTCATGGAAATGTCCCTGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate