VISDB Viral Integration Site DataBase

VIS ID

TVIS30004238

Fusion event

HIV-SEC16A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q34.3

Reference genome

Start

End

139370571/136476119 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-let-7b-5p ; hsa-mir-877-5p ; hsa-mir-744-5p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-331-3p ; hsa-mir-27b-3p ; hsa-mir-93-5p ; hsa-mir-27a-3p ; hsa-mir-218-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-1228-5p ; hsa-mir-1249-5p ; hsa-mir-128-3p ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-1321 ; hsa-mir-216a-3p ; hsa-mir-22-5p ; hsa-mir-301a-3p ; hsa-mir-301b-3p ; hsa-mir-3127-5p ; hsa-mir-3150b-3p ; hsa-mir-3175 ; hsa-mir-3612 ; hsa-mir-3666 ; hsa-mir-3681-3p ; hsa-mir-3691-3p ; hsa-mir-3918 ; hsa-mir-4295 ; hsa-mir-4302 ; hsa-mir-4419a ; hsa-mir-4510 ; hsa-mir-454-3p ; hsa-mir-4689 ; hsa-mir-4710 ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-4773 ; hsa-mir-4779 ; hsa-mir-4784 ; hsa-mir-503-5p ; hsa-mir-5088-5p ; hsa-mir-519a-3p ; hsa-mir-519b-3p ; hsa-mir-519c-3p ; hsa-mir-542-5p ; hsa-mir-5582-5p ; hsa-mir-5695 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-648 ; hsa-mir-650 ; hsa-mir-6727-5p ; hsa-mir-6777-5p ; hsa-mir-6797-5p ; hsa-mir-6858-5p ; hsa-mir-6878-5p ; hsa-mir-6889-5p

Nearest miRNA

hsa-let-7a-1/Upstream/1625312; hsa-mir-126/Downstream/43449;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/1821, chr9-CpG: 227/Downstream/6539

Upstream sequence

CCTTCCGTGGCTTCTGCTGCTATAGCTGGATGACACGCTGTCAGGGTGCACTGTATGCAGTGTGGCATCAGGGGCTCCGGTGTGGCACACAGCACCATGC

Downstream sequence

CTGGGCACAGCTGGCCCAGGAAGGGGCCCATATCTGAACTGGTCACTCGGGGAGGAAGGGTCCAAATTGAGGGGCTCACTTGGCAGAACTTCTTGATTCT