Basic Information
VIS ID
TVIS30004245
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
139970901/137076449 (Hg38)
End
139970901/137076449 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/189646; hsa-mir-3621/Downstream/92737;
Nearest TSS
ENST00000422679/Upstream/5861; ENST00000476184/Downstream/1052;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/5617, chr9-CpG: 213/Downstream/598
Nearby gene
UAP1L1(No orient, 1052)
Upstream sequence
TCTAGGAGAAAGTTTTGTGCCCAACTGGCAGAAGCTACCCTTTCATATTTTTCACAAGCAAACTAttttatttttatttttattgagaagtctcactctg
Downstream sequence
tctcccaggctggagtgcagcagcaggatctcggctcactgaaacctccgcctcctgagttcaaggcctcctgcctcagcctcccgagtagctgggacta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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