Basic Information
VIS ID
TVIS30004246
Fusion event
HIV-MAN1B1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
139982631/137088179 (Hg38)
End
139982631/137088179 (Hg38)
Orient
+
Location type
Exonic
Target gene
MAN1B1
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-125b-5p
Nearest miRNA
hsa-let-7a-1/Upstream/201376; hsa-mir-3621/Downstream/81007;
Nearest TSS
ENST00000422679/Upstream/821; ENST00000536268/Downstream/1002;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/744, chr9-CpG: 14/Downstream/15215
Upstream sequence
GAAGCAACTGTCGAGATTGCAGCGGAATATGATTCTCTTCCTCCTTGCCTTTCTGCTTTTCTGTGGACTCCTCTTCTACATCAACTTGGCTGACCATTGG
Downstream sequence
AAAGGTATCAGAAACACGTGTACTTGAAAACGATATCTGTGTTGAGGGTTGATTGGGCAGAAGCAATCTTGCATTCTACCTTAAACAGCTCCAGGAGGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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