Basic Information
VIS ID
TVIS30004249
Fusion event
HIV-MID1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
10736018/10767978 (Hg38)
End
10736018/10767978 (Hg38)
Orient
-
Location type
Intronic
Target gene
MID1
miRNAs that regulate target gene
hsa-mir-18a-5p ; hsa-mir-130b-5p ; hsa-mir-149-5p ; hsa-mir-135b-5p ; hsa-mir-218-5p ; hsa-mir-545-5p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-216b-5p ; hsa-mir-4428 ; hsa-mir-374c-5p ; hsa-mir-655-3p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-498 ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-627-3p ; hsa-mir-766-3p ; hsa-mir-338-3p ; hsa-mir-4530 ; hsa-mir-922
Nearest miRNA
hsa-mir-3690-1/Upstream/2640917; hsa-let-7f-2/Downstream/550636;
Nearest TSS
ENST00000429181/Upstream/90239; ENST00000380763/Downstream/65665;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/147532, chrX-CpG: 41/Downstream/343178
Upstream sequence
tttattgaataaatcaatgtatttattagatttataaaaGTTGTTTACGTTTCTAGAAAGAATTTGCTTGTGTGGGTTGTACGTTTGCCCAGCTAGACAG
Downstream sequence
ATACTTGAATGGTTAAACAGAAAACTGAATATATTGACTTTATAAATGTACACTAACATGTATAAAGAATTTTTGCTAATTAAGTTTATAAATGAGAGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate