Basic Information
VIS ID
TVIS30004250
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
12987581/12969462 (Hg38)
End
12987581/12969462 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-1/Upstream/1650776; hsa-let-7f-2/Downstream/620830;
Nearest TSS
ENST00000429181/Upstream/61129; ENST00000380633/Downstream/5646;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/177249, chrX-CpG: 114/Downstream/5526
Nearby gene
TMSB4X(No orient, 5645)
Upstream sequence
TGCTCCATTACCTACACTCCATTTTCCTCACCATAAAGCTATTAACCATCTTCTGCTGATGATCTGGGAACTATATTTTATATAAAGCTTTGGCACCCAC
Downstream sequence
AGAAAAAACACATTAAAAAATACAAACACTTGTTACTTGCTAAGCATAATTCTGCTTCACAATGGAATCAAAGGTTTGTCATTTTTAACACAGAAAGCCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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