Basic Information
VIS ID
TVIS30004251
Fusion event
HIV-LOC105373133 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
13064800/13046681 (Hg38)
End
13064800/13046681 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105373133
Nearest miRNA
hsa-mir-3690-1/Upstream/1727995; hsa-let-7f-2/Downstream/543611;
Nearest TSS
ENST00000429181/Upstream/1999; ENST00000568788/Downstream/46979;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/70201, chrX-CpG: 52/Downstream/332088
Nearby gene
FAM9C(No orient, 1883)
Upstream sequence
CACAAATCATTAAGCCTTTGTAAAGGGAGGAAGTCTATTTGAAGCAACTCTGGGTTGCGGAAACAGGTTTTGTGAACTAACCAAAGCCTTTAGGGCAAAC
Downstream sequence
ATGGTCACTTCAATTTTTTTTTTTTCCCACTAGAGGTTATCTACAAAGACCACAGGAAATGTTTAAGCAAATTTAAAGGAGATTTCTCAAGAGTTATTAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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