VISDB Viral Integration Site DataBase

VIS ID

TVIS30004257

Fusion event

HIV-KLHL15 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

p22.11

Reference genome

Start

End

24005961/23987844 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-21-5p ; hsa-mir-744-5p ; hsa-mir-532-3p ; hsa-mir-500a-3p ; hsa-mir-425-3p ; hsa-mir-423-3p ; hsa-mir-378a-3p ; hsa-mir-365a-3p ; hsa-mir-30b-5p ; hsa-mir-181a-5p ; hsa-mir-30c-5p ; hsa-mir-100-5p ; hsa-mir-96-5p ; hsa-mir-92a-3p ; hsa-mir-20a-5p ; hsa-mir-16-2-3p ; hsa-mir-195-3p ; hsa-mir-374a-5p ; hsa-mir-410-3p ; hsa-mir-374b-5p ; hsa-mir-1226-5p ; hsa-mir-3616-3p ; hsa-mir-4721 ; hsa-mir-548av-3p ; hsa-mir-205-3p ; hsa-mir-340-5p ; hsa-mir-543 ; hsa-mir-3143 ; hsa-mir-138-2-3p ; hsa-mir-8055 ; hsa-mir-19a-5p ; hsa-mir-19b-1-5p ; hsa-mir-19b-2-5p ; hsa-mir-2052 ; hsa-mir-4653-3p ; hsa-mir-4694-3p ; hsa-let-7f-2-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7a-3p ; hsa-let-7b-3p ; hsa-let-7f-1-3p ; hsa-mir-98-3p ; hsa-mir-129-5p ; hsa-mir-4789-5p ; hsa-mir-548at-5p ; hsa-mir-7844-5p ; hsa-mir-600 ; hsa-mir-570-3p ; hsa-mir-514a-5p ; hsa-mir-6861-5p ; hsa-mir-4528 ; hsa-mir-590-3p ; hsa-mir-3128 ; hsa-mir-7161-3p ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-let-7c-3p ; hsa-mir-6757-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-454-3p ; hsa-mir-4263 ; hsa-mir-621 ; hsa-mir-548t-3p ; hsa-mir-548aa ; hsa-mir-548ap-3p ; hsa-mir-548as-3p ; hsa-mir-548at-3p ; hsa-mir-548ay-3p ; hsa-mir-1256 ; hsa-mir-106a-3p ; hsa-mir-203a-3p ; hsa-let-7i-3p ; hsa-mir-2278 ; hsa-mir-5680 ; hsa-mir-4766-5p ; hsa-mir-3163 ; hsa-mir-137 ; hsa-mir-4255 ; hsa-mir-3671 ; hsa-mir-4640-5p ; hsa-mir-4726-5p ; hsa-mir-5692a ; hsa-mir-372-5p ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-498 ; hsa-mir-1297 ; hsa-mir-4465 ; hsa-mir-5579-3p ; hsa-mir-5580-3p ; hsa-mir-4422 ; hsa-mir-6835-3p ; hsa-mir-223-5p ; hsa-mir-491-3p ; hsa-mir-3146 ; hsa-mir-802 ; hsa-mir-1202 ; hsa-mir-2115-3p ; hsa-mir-3972 ; hsa-mir-5006-5p ; hsa-mir-320a ; hsa-mir-320b ; hsa-mir-320c ; hsa-mir-320d ; hsa-mir-3129-3p ; hsa-mir-4429 ; hsa-mir-5583-5p ; hsa-mir-1229-3p ; hsa-mir-1304-3p ; hsa-mir-3668 ; hsa-mir-489-3p ; hsa-mir-3913-3p ; hsa-mir-5000-5p ; hsa-mir-5011-3p ; hsa-mir-4699-5p ; hsa-mir-4709-3p ; hsa-mir-577 ; hsa-mir-106b-5p ; hsa-mir-1912 ; hsa-mir-1295b-5p ; hsa-mir-6780a-3p ; hsa-mir-6761-5p ; hsa-mir-4329 ; hsa-mir-4251 ; hsa-mir-4653-5p ; hsa-mir-3921 ; hsa-mir-548g-3p ; hsa-mir-590-5p ; hsa-mir-4776-3p ; hsa-mir-4291 ; hsa-mir-6809-5p ; hsa-mir-31-5p ; hsa-mir-767-5p ; hsa-mir-605-3p ; hsa-mir-4738-3p ; hsa-mir-554 ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-922 ; hsa-mir-3126-3p ; hsa-mir-3617-3p ; hsa-mir-3154 ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-3910 ; hsa-mir-3156-5p ; hsa-mir-708-3p ; hsa-mir-4282 ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-363-3p ; hsa-mir-3149 ; hsa-mir-550b-2-5p ; hsa-mir-297 ; hsa-mir-675-3p ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-3160-5p ; hsa-mir-4312 ; hsa-mir-581 ; hsa-mir-455-5p ; hsa-mir-377-3p ; hsa-mir-4751 ; hsa-mir-5004-5p ; hsa-mir-4468 ; hsa-mir-342-3p ; hsa-mir-6501-3p ; hsa-mir-1197 ; hsa-mir-1224-5p ; hsa-mir-9-3p ; hsa-mir-3915 ; hsa-mir-3928-3p ; hsa-mir-4742-3p ; hsa-mir-6770-5p ; hsa-mir-3714 ; hsa-mir-142-3p ; hsa-mir-5588-5p ; hsa-mir-4799-3p ; hsa-mir-4720-5p ; hsa-mir-6868-5p ; hsa-mir-3935 ; hsa-mir-5571-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-493-5p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-mir-503-3p ; hsa-mir-27a-5p ; hsa-mir-5589-5p ; hsa-mir-5697 ; hsa-mir-3158-3p ; hsa-mir-6864-5p ; hsa-mir-513b-5p ; hsa-mir-4437 ; hsa-mir-7515 ; hsa-mir-3179 ; hsa-mir-4264 ; hsa-mir-4704-3p ; hsa-mir-4719 ; hsa-mir-16-1-3p ; hsa-mir-5088-5p ; hsa-mir-24-3p ; hsa-mir-361-5p ; hsa-mir-4482-3p ; hsa-mir-1304-5p ; hsa-mir-6765-5p ; hsa-mir-585-5p ; hsa-mir-4252 ; hsa-mir-6797-3p ; hsa-mir-6076 ; hsa-mir-6089 ; hsa-mir-5008-5p ; hsa-mir-4717-5p ; hsa-mir-335-5p ; hsa-mir-514b-3p ; hsa-mir-514a-3p ; hsa-mir-8061 ; hsa-mir-4760-5p ; hsa-mir-3156-3p ; hsa-mir-376a-5p ; hsa-mir-4433a-5p ; hsa-mir-4660 ; hsa-mir-5707 ; hsa-mir-4301 ; hsa-mir-181a-2-3p ; hsa-mir-5011-5p ; hsa-mir-2114-5p ; hsa-mir-5588-3p ; hsa-mir-4724-5p ; hsa-mir-5708 ; hsa-mir-339-3p ; hsa-mir-4764-5p ; hsa-mir-6776-3p ; hsa-mir-33a-3p ; hsa-mir-4666b ; hsa-mir-4680-5p ; hsa-mir-4796-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-885-3p ; hsa-mir-6505-3p ; hsa-mir-216b-3p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-6838-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-3674 ; hsa-mir-5706 ; hsa-mir-4782-5p ; hsa-mir-1299 ; hsa-mir-516b-5p ; hsa-mir-4772-5p ; hsa-mir-383-5p ; hsa-mir-216a-5p ; hsa-mir-216b-5p ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-3918 ; hsa-mir-6895-5p ; hsa-mir-1255b-2-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-93-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p

Nearest miRNA

hsa-mir-23c/Upstream/3970657; hsa-let-7f-2/Downstream/4507711;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/79646, chrX-CpG: 138/Downstream/36874

Upstream sequence

AGTTTGAGGCCACTGAAAAGAAAAAAAGGATGCTAGCACAGAATGAAAAATTCTTACAATGTTAGACCAATGGCTTTGATAGTAAAACTGGTGAGGTTTT

Downstream sequence

TCTTTATATGTTTTAATTAATTACTCTGTGCAAACAAATACTTTGTTTGCCTCTTTTTTTAGGGAGGAGGATGTCATTAGTTGCAACGCCTGACCTCATC