Basic Information
VIS ID
TVIS30004259
Fusion event
HIV-MED14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.4
Reference genome
GRCh37/hg19
Start
40557317/40698065 (Hg38)
End
40557317/40698065 (Hg38)
Orient
+
Location type
Intronic
Target gene
MED14
miRNAs that regulate target gene
hsa-mir-532-3p ; hsa-mir-181b-5p ; hsa-let-7b-5p ; hsa-mir-510-3p ; hsa-mir-4738-3p ; hsa-mir-7844-5p ; hsa-mir-6507-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p
Nearest miRNA
hsa-mir-1587/Upstream/860452; hsa-let-7f-2/Downstream/5048092;
Nearest TSS
ENST00000429181/Upstream/15152; ENST00000456333/Downstream/16986;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/50335, chrX-CpG: 94/Downstream/37198
Upstream sequence
gtttgtcaactgttctggaaaccattttgtttttttcattgaaagacaaatttaactacaactctacggatcaaatgcaagaactggttactgatgaagg
Downstream sequence
aatgaagataaattttgaaaatataccatcacttgcttcattttgaataaaagttaaaaatgaatatcctgaacttgctaaaatttatttcaaatctcta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate