Basic Information
VIS ID
TVIS30004269
Fusion event
HIV-CHST7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.3
Reference genome
GRCh37/hg19
Start
46454435/46595000 (Hg38)
End
46454435/46595000 (Hg38)
Orient
-
Location type
Intronic
Target gene
CHST7
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-1587/Upstream/847876; hsa-let-7f-2/Downstream/992429;
Nearest TSS
ENST00000429181/Upstream/21216; ENST00000218340/Downstream/26016;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/19533, chrX-CpG: 117/Downstream/163578
Upstream sequence
ggttccacaggcccctgaggctctgtttatctttttttaactctattttctgttgttcagatttgataatttctattgttctatttttagattcactaag
Downstream sequence
tccttactctatcatctctattctgctattgagcccatccagtgagtttttcaaatttttgttattgtattttacagttctaaaatttctatttggttgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate