Basic Information
VIS ID
TVIS30004271
Fusion event
HIV-OTUD5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
48784565/48927290 (Hg38)
End
48784565/48927290 (Hg38)
Orient
-
Location type
Intronic
Target gene
OTUD5
miRNAs that regulate target gene
hsa-mir-505-3p ; hsa-mir-339-5p ; hsa-mir-328-3p ; hsa-let-7e-5p ; hsa-mir-1260b ; hsa-mir-520a-5p ; hsa-mir-4417 ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-664b-5p ; hsa-mir-6722-3p ; hsa-mir-885-3p ; hsa-mir-1909-3p ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-4693-3p ; hsa-mir-4712-3p ; hsa-mir-6782-5p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-6873-5p ; hsa-mir-4443 ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-3120-3p ; hsa-mir-1273d
Nearest miRNA
hsa-mir-1587/Upstream/1339785; hsa-let-7f-2/Downstream/1075858;
Nearest TSS
ENST00000429181/Upstream/8266; ENST00000482476/Downstream/9049;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/7754, chrX-CpG: 132/Downstream/29715
Upstream sequence
gtgttaaacacactccaagtgttttttctactctcactcaacaacaatcaacacaggagacttctgtgaccaagtgtgcgggctggggggagggtgtttt
Downstream sequence
cccacacagcaagcagcggacacctggtgtccatcctccaatgcaattcaatacccagagacagcctgggatcccacaggttgagggctcagtcccacaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate