Basic Information
VIS ID
TVIS30004281
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
77597721/78342224 (Hg38)
End
77597721/78342224 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/1336723; hsa-mir-105-1/Downstream/558970;
Nearest TSS
ENST00000429181/Upstream/14533; ENST00000610214/Downstream/317104;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/202429, chrX-CpG: 27/Downstream/1992997
Nearby gene
CYSLTR1(No orient, 14533)
Upstream sequence
ggctatcttccttcactgacttgcttttgtacctttgtcaaagatcaggtgggtataagtgtatggatctacttctaggttttctgtttatttgcagtga
Downstream sequence
tctacatgtctatccatatgccaatagcgcattgtgattattaatctagcaatttataaattcataaaattgggtagagtgattgtttcactttattttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate