Basic Information
VIS ID
TVIS30004282
Fusion event
HIV-LOC107985690 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
78405166/79149669 (Hg38)
End
78405166/79149669 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107985690
Nearest miRNA
hsa-let-7f-2/Upstream/248420; hsa-mir-105-1/Downstream/5076083;
Nearest TSS
ENST00000429181/Upstream/5006; ENST00000276077/Downstream/21303;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/1009874, chrX-CpG: 27/Downstream/1185552
Nearby gene
GPR174(No orient, 21303)
Upstream sequence
CTATGACTTCTAAAAGTTTATTAGGGTTAAAAAGAGAATTCTACCTAGCTGAAGCAGAGTATGAATATAACAGACTAGACTGTAAAGTGGCTGGTCTAGA
Downstream sequence
TAATCCATCCAGATTACTTAGGGAAGGAAGATTTGTGACCCAAGTTATCCTGAGTGAGTGATCATATATTGGGTTTGGGGATACCCAGTTTTGCTCTGAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate