VISDB Viral Integration Site DataBase

VIS ID

TVIS30004290

Fusion event

HIV-DOCK11 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

q24

Reference genome

Start

End

117687752/118553789 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-92b-3p ; hsa-mir-99a-5p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-4786-5p ; hsa-mir-4468 ; hsa-mir-6849-3p ; hsa-mir-4293 ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-6771-3p ; hsa-mir-122-5p ; hsa-mir-143-5p ; hsa-mir-3689d ; hsa-mir-377-5p ; hsa-mir-4426 ; hsa-mir-4463 ; hsa-mir-4494 ; hsa-mir-4534 ; hsa-mir-455-3p ; hsa-mir-4647 ; hsa-mir-4662b ; hsa-mir-4695-3p ; hsa-mir-4802-5p ; hsa-mir-504-3p ; hsa-mir-566 ; hsa-mir-5693 ; hsa-mir-5698 ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-652-3p ; hsa-mir-6787-3p ; hsa-mir-6789-3p ; hsa-mir-6807-5p ; hsa-mir-6851-5p ; hsa-mir-7641 ; hsa-mir-8082

Nearest miRNA

hsa-let-7f-2/Upstream/167318; hsa-mir-105-1/Downstream/1092949;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/57283, chrX-CpG: 108/Downstream/173462

Upstream sequence

ACCTAAGAAAGCACATACAATATTAAAATAATTGCTAGGAGGTCAAGGTCACTATGTGTGTTAGAACAAAAGGAAGAGAAAATATTTTATTTTTGATATC

Downstream sequence

TTAGTCCAATTGTATTCTCAAATCTACCAGACTATCTCTTACAGCTAACAAATGGATTGCATTCATTTATTATGCATAAGATTTTTTCATTAATTTGTTT