Basic Information
VIS ID
TVIS30004295
Fusion event
HIV-THOC2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q25
Reference genome
GRCh37/hg19
Start
122808809/123674958 (Hg38)
End
122808809/123674958 (Hg38)
Orient
-
Location type
Intronic
Target gene
THOC2
miRNAs that regulate target gene
hsa-mir-218-5p ; hsa-mir-34a-5p ; hsa-mir-21-5p ; hsa-mir-1180-3p ; hsa-mir-877-3p ; hsa-mir-183-5p ; hsa-mir-3591-5p ; hsa-mir-3156-3p ; hsa-mir-921 ; hsa-mir-3606-5p ; hsa-mir-3140-3p ; hsa-mir-7106-3p ; hsa-mir-6831-3p ; hsa-mir-532-3p ; hsa-mir-4301 ; hsa-mir-1273g-3p ; hsa-mir-641 ; hsa-mir-3617-5p
Nearest miRNA
hsa-let-7f-2/Upstream/2303905; hsa-mir-105-1/Downstream/10494420;
Nearest TSS
ENST00000429181/Upstream/48322; ENST00000422098/Downstream/22729;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/489661, chrX-CpG: 75/Downstream/57391
Upstream sequence
caaattacatttttatagtgtgccatttgacagatttataacctgggtgatgggatgaattgtaccccaaacctcagcatcacacaatatacccaggtaa
Downstream sequence
caaacctgcacatgtaccccgagtctaaaataaaagttgaaattatctttttaaagattcataattattatgtatttgtcttttaagtcatataggaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate