Basic Information
VIS ID
TVIS30004296
Fusion event
HIV-STAG2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q25
Reference genome
GRCh37/hg19
Start
123205136/124071286 (Hg38)
End
123205136/124071286 (Hg38)
Orient
-
Location type
Exonic
Target gene
STAG2
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-34a-5p ; hsa-mir-21-5p ; hsa-mir-193b-3p ; hsa-mir-186-5p ; hsa-mir-182-5p ; hsa-mir-181a-5p ; hsa-mir-136-5p ; hsa-mir-8081 ; hsa-mir-6869-5p ; hsa-mir-1911-5p ; hsa-mir-3651 ; hsa-mir-6865-3p ; hsa-mir-449b-3p ; hsa-mir-409-3p ; hsa-mir-409-5p
Nearest miRNA
hsa-let-7f-2/Upstream/2700233; hsa-mir-105-1/Downstream/10098092;
Nearest TSS
ENST00000429181/Upstream/108116; ENST00000475602/Downstream/22627;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/110554, chrX-CpG: 42/Downstream/261549
Upstream sequence
CCATCAGATTATGTCAGGAGGGCGTGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCATTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCAT
Downstream sequence
GTCTTCATTGAACAGGATGATGATAATAATAGTGCAGGTAATTTTATTGCCATCTTTTTATTAAATCTGTGTCCACCATAAAATCAAACTTAAGTAACAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate