Basic Information
VIS ID
TVIS30004298
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
128935926/129801950 (Hg38)
End
128935926/129801950 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/8430897; hsa-mir-105-1/Downstream/4367428;
Nearest TSS
ENST00000429181/Upstream/21966; ENST00000498179/Downstream/21838;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/123408, chrX-CpG: 43/Downstream/41614
Nearby gene
ZDHHC9(No orient, 1338)
Upstream sequence
agcatgggtgacagagtgaaaccctgtctccaaaaaaaaaaaaaaaaGtattttcaaataatttctaatgatatggaaaatactaagttaaaaaagcagg
Downstream sequence
tttacaaaactacatttatagtctaattccagttatgtttaaaaaaaacatgtgcacagaaaaaaagactaccaagaaatgcaccaaaacattaattaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate