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TVIS30004300
Basic Information
VIS ID
TVIS30004300
Fusion event
HIV-ZNF449 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
134491375/135357450 (Hg38)
End
134491375/135357450 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF449
miRNAs that regulate target gene
hsa-mir-215-5p
;
hsa-mir-192-5p
;
hsa-mir-15a-5p
;
hsa-mir-16-5p
;
hsa-mir-103a-3p
;
hsa-mir-107
;
hsa-mir-15b-5p
;
hsa-mir-195-5p
;
hsa-mir-424-5p
;
hsa-mir-497-5p
;
hsa-mir-4524a-5p
;
hsa-mir-5007-3p
;
hsa-mir-4524b-5p
;
hsa-mir-6838-5p
;
hsa-mir-411-5p
;
hsa-mir-3935
;
hsa-mir-4423-3p
;
hsa-mir-5582-5p
;
hsa-mir-2278
;
hsa-mir-297
;
hsa-mir-223-5p
;
hsa-mir-567
;
hsa-mir-6499-3p
;
hsa-mir-4302
;
hsa-mir-380-3p
;
hsa-mir-411-3p
;
hsa-mir-379-3p
;
hsa-mir-4495
;
hsa-mir-4519
;
hsa-mir-4274
;
hsa-mir-944
;
hsa-mir-562
;
hsa-mir-631
;
hsa-mir-3661
;
hsa-mir-499b-5p
;
hsa-mir-4781-3p
;
hsa-mir-646
;
hsa-mir-619-3p
;
hsa-mir-503-5p
;
hsa-mir-6798-3p
;
hsa-mir-6503-3p
;
hsa-mir-3622a-5p
;
hsa-mir-4759
;
hsa-mir-4640-3p
;
hsa-mir-335-3p
;
hsa-mir-3686
;
hsa-mir-4684-5p
;
hsa-mir-452-3p
;
hsa-mir-4742-3p
;
hsa-mir-4778-5p
;
hsa-mir-4262
;
hsa-mir-3675-3p
;
hsa-mir-181c-5p
;
hsa-mir-181b-5p
;
hsa-mir-181a-5p
;
hsa-mir-181d-5p
Nearest miRNA
hsa-let-7f-2/Upstream/810739; hsa-mir-105-1/Downstream/1193428;
Nearest TSS
ENST00000429181/Upstream/12654;
ENST00000417443/Downstream/64493;
Nearest CpG islands
None/Target,
chrX-CpG: 62/Upstream/12318
,
chrX-CpG: 101/Downstream/64263
Upstream sequence
ccgtggagacatccaggtgtctcagcattatttgttgaaaaggctattctttttatattgaatatccttgaaacccttttcaaaatcagttgaccacagg
Downstream sequence
acaggtatatggatttattgctagattctcatttctattctgttatgtttagttggtttatagtattttctatgtcttgtattattgatcttctgcctag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Active CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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