Basic Information
VIS ID
TVIS30004302
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
135664952/136582793 (Hg38)
End
135664952/136582793 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/31833; hsa-mir-105-1/Downstream/2084918;
Nearest TSS
ENST00000429181/Upstream/32351; ENST00000370629/Downstream/65400;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/84853, chrX-CpG: 104/Downstream/184078
Nearby gene
VGLL1(No orient, 25986)
Upstream sequence
atcacaggaccacatgtacagtggtggtcctataagattacaatggaattaaaaatttcctattgcctagtggcattgtagtcatagtaacgttgcagcc
Downstream sequence
ctaacaccataatgcaatgcaatgcattactcatgtttgtgacactagtgttaacaagctattgctctgccagtcatataaaagactagcaatacaacta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate