Basic Information
VIS ID
TVIS30004308
Fusion event
HIV-TMEM187 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
153242530/153977079 (Hg38)
End
153242530/153977079 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRAXE ; FRAXF
Target gene
TMEM187
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-let-7f-2/Upstream/641542; hsa-mir-1184-1/Downstream/4018;
Nearest TSS
ENST00000429181/Upstream/4221; ENST00000431598/Downstream/3527;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/4050, chrX-CpG: 37/Downstream/5056
Upstream sequence
ttcttatgtaaaatatttaaaaaatcaagctcatggaaatagaagcatagtgggtattagaagctggaaagattagagagtagggaaagattcggaggag
Downstream sequence
tcggataacaaatacaaaatgccagcttcatagcatgaatggatcctgctgttctgcactgtagggtgagcactgttaactacaatttcttgtgtatttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate