Basic Information
VIS ID
TVIS30004311
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
153835702/154607449 (Hg38)
End
153835702/154607449 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRAXE ; FRAXF
Nearest miRNA
hsa-let-7f-2/Upstream/157063; hsa-mir-1184-1/Downstream/161147;
Nearest TSS
ENST00000429181/Upstream/22295; ENST00000475423/Downstream/11822;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/46862, chrX-CpG: 29/Downstream/36401
Nearby gene
CTAG1B(No orient, 10163)
Upstream sequence
ccagtaagcacatgaaatgatgcttaacatccttagtcattagggaaacgcaagtcaaaaccacaatgagataccacttcacagttaagttactaggatg
Downstream sequence
gttacttaaaaaatagaaaatagtaagagttgacgaggatggggagaagttggaaccctcatctattcccgactggaatgtaatcgtgcaggcactatgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate