Basic Information
VIS ID
TVIS30004314
Fusion event
HIV-UTY integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrY
Cytoband
q11.221
Reference genome
GRCh37/hg19
Start
15510155/13398275 (Hg38)
End
15510155/13398275 (Hg38)
Orient
+
Location type
Intronic
Target gene
UTY
Nearest miRNA
hsa-mir-3690-2/Upstream/8792047; hsa-mir-12120/Downstream/80902;
Nearest TSS
ENST00000430575/Upstream/482779; ENST00000284856/Downstream/81229;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/492888, chrY-CpG: 33/Downstream/81104
Upstream sequence
AATATGCCGAGTCAGGTTGAGAACTGCCAATTAACAAAGAACAAAATTAATGTTTGCTACATGATACTACAATCAAAGAATGATCACAAATAGCATCATG
Downstream sequence
AGAGTGAACACTTTAGCTAGTAGACATAGGCTTGGCATCTGTGTTATAATATTTAAGTTGGGcttttcagcaaatggtgtttgaaaaactaagtatctgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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