Basic Information
VIS ID
TVIS30004315
Fusion event
HIV-KLHL17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.33
Reference genome
GRCh37/hg19
Start
898899/963519 (Hg38)
End
898899/963519 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
KLHL17
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-12136/Upstream/330834; hsa-mir-101-1/Downstream/203585;
Nearest TSS
ENST00000473358/Upstream/792; ENST00000481067/Downstream/33;
Nearest CpG islands
chr1-CpG: 616/Target, None/Upstream, None/Downstream
Upstream sequence
CAAGGCGAAGCTGCCTGGGTGTGGCCGCCTTGCATGGACTCCTGTACTCGGCCGGCGGCTATGACGGGGCCTCCTGCCTGAACAGGTAGTTGGGGTTGGG
Downstream sequence
GCCCCAGTGGCTTTGTACAGTCCATCTGCAAGAGGCAAGTTTGTGTCACCATCACAGGGGTCGTATCTGATGGGGTGTTAAAGGAGGTGATCCGCGAGGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate