Basic Information
VIS ID
TVIS30004319
Fusion event
HIV-PUSL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.33
Reference genome
GRCh37/hg19
Start
1244944/1309564 (Hg38)
End
1244944/1309564 (Hg38)
Orient
+
Location type
Exonic
Fragile sites / regions
FRA1A
Target gene
PUSL1
Nearest miRNA
hsa-mir-12136/Upstream/13394; hsa-mir-101-1/Downstream/2938;
Nearest TSS
ENST00000473358/Upstream/329; ENST00000488011/Downstream/45;
Nearest CpG islands
chr1-CpG: 298/Target, None/Upstream, None/Downstream
Upstream sequence
CCTTCCGAGTGCCCAGCGACTTCCACGCTCGTCACGCAGCCACGTCCCGGACCTACCTGTACCGCCTGGCCACTGGCTGTCACCGGCGTGATGAGCTGCC
Downstream sequence
GGTGTTTGAACGCAACCTATGCTGGACTCTCCCGGCAGAGTGAGTGTGGCCCTGACAGCGGGGAGGGGGCGGGCAGGCCGGCCCCACCCTCCTGACGGTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate