Basic Information
VIS ID
TVIS30004321
Fusion event
HIV-PANK4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.32
Reference genome
GRCh37/hg19
Start
2452763/2521324 (Hg38)
End
2452763/2521324 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
PANK4
Nearest miRNA
hsa-mir-12136/Upstream/1181616; hsa-mir-101-1/Downstream/606651;
Nearest TSS
ENST00000473358/Upstream/423; ENST00000644246/Downstream/4863;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1212, chr1-CpG: 16/Downstream/32
Upstream sequence
AGGTATTCTCAAACTTAATGAAGTGCAGTCGAGCAGTGATCTCTTCTTGAACTGAAATCTCATAGGGCGGCTCATGTTCACGTTCTGTGTCCTGGAAAAC
Downstream sequence
AGAGTAGGGGAGGCCGCATGTGTGTGGGACACCGCGCCGGGCTGGGCTGTGCGCACCCTGCCCTAGTGGAGCTGGCTGTTCGCGCCAGCCTTCAACCAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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