VISDB Viral Integration Site DataBase

VIS ID

TVIS30004331

Fusion event

HIV-TXLNA integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p35.2

Reference genome

Start

End

32655121/32189520 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-32-5p ; hsa-mir-26b-5p ; hsa-mir-320b ; hsa-mir-1227-3p ; hsa-mir-877-3p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-423-3p ; hsa-mir-196b-5p ; hsa-mir-15b-5p ; hsa-mir-92a-3p ; hsa-mir-17-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-mir-98-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-299-3p ; hsa-mir-573 ; hsa-mir-595 ; hsa-mir-937-5p ; hsa-mir-3616-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-4742-5p ; hsa-mir-4795-5p ; hsa-mir-5702 ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-25-3p ; hsa-mir-92a-2-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-608 ; hsa-mir-1224-5p ; hsa-mir-1185-5p ; hsa-mir-3605-5p ; hsa-mir-3679-5p ; hsa-mir-3915 ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-4651 ; hsa-mir-4689 ; hsa-mir-5589-3p ; hsa-mir-6751-5p ; hsa-mir-6752-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6796-5p ; hsa-mir-6803-5p ; hsa-mir-6842-5p ; hsa-mir-6858-5p ; hsa-mir-7110-5p ; hsa-mir-4428 ; hsa-mir-4491 ; hsa-mir-4657 ; hsa-mir-3650 ; hsa-mir-486-3p ; hsa-mir-6721-5p ; hsa-mir-4722-5p ; hsa-mir-6770-5p ; hsa-mir-539-5p ; hsa-mir-4768-3p ; hsa-mir-5680 ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-526b-5p ; hsa-mir-6742-5p ; hsa-mir-3151-5p ; hsa-mir-491-5p ; hsa-mir-6835-5p ; hsa-mir-6848-5p ; hsa-mir-6846-5p ; hsa-mir-4697-5p ; hsa-mir-4488 ; hsa-mir-1237-5p ; hsa-mir-6828-5p ; hsa-mir-873-5p ; hsa-mir-4762-5p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-6715b-5p ; hsa-mir-4269

Nearest miRNA

hsa-mir-12136/Upstream/102513; hsa-mir-101-1/Downstream/1142873;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/9307, chr1-CpG: 20/Downstream/11110

Upstream sequence

ACAGAGGGGACAAATGCACATTAATCTGAAATCTGGAAGAATAGGCCTTAGGAGATCCGACTTGCTTCAGAATGGCACTTAGCACTTACATGTGTGCATG

Downstream sequence

TGTGCCTGCAttttttcttcctttttttttttttggggacggagtcttgctctgtggcccatcgcccaggctggagtgcagtggcgcgatcatagctcac