Basic Information
VIS ID
TVIS30004341
Fusion event
HIV-PIK3R3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.1
Reference genome
GRCh37/hg19
Start
46531997/46066325 (Hg38)
End
46531997/46066325 (Hg38)
Orient
-
Location type
Intronic
Target gene
PIK3R3
miRNAs that regulate target gene
hsa-mir-18a-3p ; hsa-mir-346 ; hsa-mir-331-3p ; hsa-mir-7-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-148b-3p ; hsa-mir-193a-5p ; hsa-mir-132-3p ; hsa-mir-152-3p
Nearest miRNA
hsa-mir-12136/Upstream/1520773; hsa-mir-101-1/Downstream/4993512;
Nearest TSS
ENST00000473358/Upstream/8891; ENST00000452785/Downstream/66291;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/262177, chr1-CpG: 84/Downstream/66129
Upstream sequence
ATGTGGAAATAGATTTTCCACATCTATTTTTTAAAGGAAAATATCACCTCAACCATCTATTAAACTATATTTCAACTGTACAACTTTAAGCCACTGTATT
Downstream sequence
AATATCAAGCACACAAATGTACCAAATCCTTTGATAATATTAAGATCAGCCTTTAAGTCACATCAAAATGATTAATACTTTAAAAATTAAGAAATGAAGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate