VISDB Viral Integration Site DataBase

VIS ID

TVIS30004343

Fusion event

HIV-TMEM59 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p32.3

Reference genome

Start

End

54505502/54039829 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-149-5p ; hsa-mir-1260b ; hsa-mir-142-3p ; hsa-mir-1200 ; hsa-mir-378a-5p ; hsa-mir-616-3p ; hsa-mir-6073 ; hsa-mir-3140-5p ; hsa-mir-584-3p ; hsa-mir-3974 ; hsa-mir-7852-3p ; hsa-mir-548m ; hsa-mir-550b-2-5p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-8077 ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-4252 ; hsa-mir-6889-3p ; hsa-mir-6504-5p ; hsa-mir-3064-5p ; hsa-mir-4438 ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-7160-5p ; hsa-mir-4663 ; hsa-mir-4711-5p ; hsa-mir-7112-3p ; hsa-mir-93-3p ; hsa-mir-6761-5p ; hsa-mir-4328 ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-383-5p ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-133a-3p ; hsa-mir-670-5p ; hsa-mir-4281 ; hsa-mir-591 ; hsa-mir-4319 ; hsa-mir-125b-5p ; hsa-mir-125a-5p ; hsa-mir-4732-3p ; hsa-mir-345-3p ; hsa-mir-6884-3p ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-5189-3p ; hsa-mir-4786-5p ; hsa-mir-4299 ; hsa-mir-7162-3p ; hsa-mir-544b ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-490-3p ; hsa-mir-4722-5p ; hsa-mir-6134 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4257 ; hsa-mir-6847-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-665 ; hsa-mir-6771-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929

Nearest miRNA

hsa-mir-12136/Upstream/2203427; hsa-mir-101-1/Downstream/14250;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/93159, chr1-CpG: 55/Downstream/13099

Upstream sequence

CACTCACTGAAATGCTTGACCTGGTATCTGACACCGAGTAGGTGATAGTCAATAAGTGGTATGGCCCACTATCTTTCTCTTTTTCCTTTTTTTGTTGGGG

Downstream sequence

GTGGGGAGGAGTAAAATGTGGGGGAGGGACCATATCTGAACTCCTTGGAGAAGAGGAAACATGCACACTTTCATAAAACCTGCCTCTCACCCTCATAAGG