Basic Information
VIS ID
TVIS30004345
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37/hg19
Start
83557544/83091861 (Hg38)
End
83557544/83091861 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1L
Target gene
LINC01362 ; LOC107985037
Nearest miRNA
hsa-mir-101-1/Upstream/6031659; hsa-mir-11399/Downstream/2041933;
Nearest TSS
ENST00000473358/Upstream/105653; ENST00000446227/Downstream/354106;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1288498, chr1-CpG: 50/Downstream/768723
Nearby gene
LINC01361(No orient, 105653)
Upstream sequence
TACCATCTCTTAAGATGCTGTTGCTGTACCCTTCAGCACATTATCTAATGATACACCAACTGATGTACAGAAAATTACATTAAGAAGGCTGGCATGTTTT
Downstream sequence
AGAAGAAGCCTGTATATAACAATCAGTCCTCAGATCTCAAACCAAAATGAAGCTTTAAAAATAGTGGGTAATGTACAAACTTCTTAATAAGGCTTTAAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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