Fusion event
HIV-NBPF20 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
145243388/146194804 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/344159; hsa-mir-1182/Downstream/2139675;
Upstream sequence
gaatggaactgagttcaatgacgatctgttcaggaaagagggcataaactgggcagagaatgcagtggaagtggtggggAGTAATACTGGGCACGTAAGG
Downstream sequence
TAAGCTCTGATCTGGAAGGCCAGCATGGGAGCCTAGACTGGTTAAAGTAAGAAATGGCTTGTCCTTGGAAGAAAAAGTGTCAAACTTGGTACTGTGTGAA
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.