Basic Information
VIS ID
TVIS30004355
Fusion event
HIV-PRPF3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
150322602/150350126 (Hg38)
End
150322602/150350126 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
PRPF3
Nearest miRNA
hsa-mir-101-1/Upstream/1961763; hsa-mir-1182/Downstream/142219;
Nearest TSS
ENST00000473358/Upstream/1442; ENST00000369067/Downstream/12965;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/28435, chr1-CpG: 16/Downstream/14229
Upstream sequence
ctgggattacaggtgcacgccaccatgcccgactaatttttgtatttatagtagagacagggtttctccatgttggtcaggctggtcttgaactcccaac
Downstream sequence
ctcaggtgatccgcctgcctcggcctcccaaagtgctgggattacaggcatgagccactgtgcccagccCCTCCAtttctttttttttttttttgagaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate