Basic Information
VIS ID
TVIS30004363
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
173982479/174013341 (Hg38)
End
173982479/174013341 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1G
Nearest miRNA
hsa-mir-101-1/Upstream/1868697; hsa-mir-1182/Downstream/1955029;
Nearest TSS
ENST00000473358/Upstream/20269; ENST00000424181/Downstream/8956;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/144562, chr1-CpG: 93/Downstream/8326
Nearby gene
RC3H1(No orient, 20269)
Upstream sequence
CATATAAACAGGAAAGTTCTCCATGAGAGTGAATGGAAGTGGAGAATTGAACCTTGGGGGAATCATAtatatcagtgctttccaatatggtagccactag
Downstream sequence
gtacatgtggctattgagcccttgaaatgtgctggtgagacggaggaattaaattttaaatAAAATTTAAATGTATCCATACAATGGaatattattatta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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