Basic Information
VIS ID
TVIS30004368
Fusion event
HIV-KIF21B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
200991850/201022722 (Hg38)
End
200991850/201022722 (Hg38)
Orient
+
Location type
Intronic
Target gene
KIF21B
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-218-5p ; hsa-mir-484 ; hsa-mir-6874-5p ; hsa-mir-4633-3p ; hsa-mir-6500-5p ; hsa-mir-3670 ; hsa-mir-4264 ; hsa-mir-6814-5p ; hsa-mir-1910-5p ; hsa-mir-455-3p ; hsa-mir-3922-5p ; hsa-mir-6854-5p ; hsa-mir-4459 ; hsa-mir-4701-5p ; hsa-mir-4755-3p ; hsa-mir-4779 ; hsa-mir-5002-3p ; hsa-mir-5006-5p ; hsa-mir-588 ; hsa-mir-663b ; hsa-mir-665 ; hsa-mir-7108-5p
Nearest miRNA
hsa-mir-101-1/Upstream/2163569; hsa-mir-1182/Downstream/696786;
Nearest TSS
ENST00000473358/Upstream/17132; ENST00000446333/Downstream/686;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/21912, chr1-CpG: 75/Downstream/432
Upstream sequence
ATGGAACCCCAGATAAGTCTAGGCAACCCTCCCCTGCTCAATTTTATCTGAGTGCCTGAGGATGGGGCATCTGCATCACACCCTCCTGCCCTCTCAGAGA
Downstream sequence
GAAGCACCTCAGATACACCTCTTCCTCCCTTCCTAGGCCCATCTCCTCTTGGGACAGGACTGGTAGGATTCTCCCCCAAAGCCATTGACTTCCCACAGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate