Basic Information
VIS ID
TVIS30004373
Fusion event
HIV-LINC02663 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
9688655/9646692 (Hg38)
End
9688655/9646692 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02663
Nearest miRNA
hsa-mir-3155a/Upstream/3494415; hsa-mir-107/Downstream/2484068;
Nearest TSS
ENST00000439456/Upstream/370859; ENST00000429539/Downstream/112545;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/238446, chr10-CpG: 30/Downstream/619503
Nearby gene
LOC101928272(No orient, 351099)
Upstream sequence
AGGCTGTATAATGCTAATTAGTTAATTTATGACAATAAGGTTTATAATGACATTTCAGTACCTTCCCTGTGCCAAGTGGCCAGTTAAAAGAATGGGTTAT
Downstream sequence
CAATTGATAACTAAATCATCAGTTGTTTTCAGCAAACCTTTTCCTCAAAGTTCACTTTCGAGATTACTTCTCAGAATGTCTTTCCCCAAAGTTCCACAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate