VISDB Viral Integration Site DataBase

VIS ID

TVIS30004376

Fusion event

HIV-WAC integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

p12.1

Reference genome

Start

End

28847430/28558501 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-484 ; hsa-mir-18b-5p ; hsa-mir-15b-5p ; hsa-mir-93-5p ; hsa-mir-20a-5p ; hsa-mir-18a-5p ; hsa-mir-17-5p ; hsa-mir-3658 ; hsa-mir-106a-5p ; hsa-mir-154-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-548t-5p ; hsa-mir-4709-5p ; hsa-mir-5590-5p ; hsa-mir-548az-5p ; hsa-mir-595 ; hsa-mir-764 ; hsa-mir-3153 ; hsa-mir-4261 ; hsa-mir-4772-5p ; hsa-mir-6513-3p ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-577 ; hsa-mir-583 ; hsa-mir-4428 ; hsa-mir-6888-5p ; hsa-mir-4672 ; hsa-mir-6768-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-345-3p ; hsa-mir-1247-5p ; hsa-mir-515-3p ; hsa-mir-519e-3p ; hsa-mir-33b-3p ; hsa-mir-6768-3p ; hsa-mir-6885-5p ; hsa-mir-328-5p ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-4723-5p ; hsa-mir-5698 ; hsa-mir-486-3p ; hsa-mir-6825-5p ; hsa-mir-6721-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-6722-3p ; hsa-mir-6798-5p ; hsa-mir-1909-3p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-5584-5p ; hsa-mir-4717-5p ; hsa-mir-4753-5p ; hsa-mir-3653-3p ; hsa-mir-1276 ; hsa-mir-4311 ; hsa-mir-6833-5p ; hsa-mir-493-5p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-let-7c-3p ; hsa-mir-5007-3p ; hsa-mir-3911 ; hsa-mir-3190-3p ; hsa-mir-383-5p ; hsa-mir-1279 ; hsa-mir-3934-5p ; hsa-mir-125a-3p ; hsa-mir-6757-3p ; hsa-mir-3679-3p ; hsa-mir-6826-3p ; hsa-mir-4522 ; hsa-mir-219a-2-3p ; hsa-mir-219b-3p ; hsa-mir-342-3p ; hsa-mir-6780b-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-6810-3p ; hsa-mir-6801-3p ; hsa-mir-331-3p ; hsa-mir-424-3p ; hsa-mir-548ad-3p ; hsa-mir-3680-3p ; hsa-mir-450b-5p ; hsa-mir-4735-5p ; hsa-mir-4775 ; hsa-mir-507 ; hsa-mir-557 ; hsa-mir-590-3p

Nearest miRNA

hsa-mir-1265/Upstream/269151; hsa-mir-107/Downstream/986503;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/24338, chr10-CpG: 59/Downstream/109978

Upstream sequence

gagcagttgccttatttggactaagtgggaagttcaagacattgtaactaatacctatttggccacctgtgattggctgagtgtgtttcattttcATTAG

Downstream sequence

GAAGCCGGGTTTGTTTAATTTTAATTCTTTTGAGTTATGTGTAGCAATCTATTTGtataaatataaattgtaaaaaaaaattatGTAAGTGAACCACCTG