VISDB Viral Integration Site DataBase

VIS ID

TVIS30004377

Fusion event

HIV-MTPAP integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

p11.23

Reference genome

Start

End

30629658/30340729 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-93-5p ; hsa-mir-30c-5p ; hsa-mir-361-5p ; hsa-mir-101-5p ; hsa-mir-5582-3p ; hsa-mir-5197-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-636 ; hsa-mir-218-5p ; hsa-mir-4720-3p ; hsa-mir-4804-3p ; hsa-mir-6504-3p ; hsa-mir-1-5p ; hsa-mir-455-5p ; hsa-mir-5692a ; hsa-mir-1227-3p ; hsa-mir-8075 ; hsa-mir-4252 ; hsa-mir-496 ; hsa-mir-181a-2-3p ; hsa-mir-499b-5p ; hsa-mir-4494 ; hsa-mir-4307 ; hsa-mir-2115-3p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-4796-3p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-25-5p ; hsa-mir-3160-3p ; hsa-mir-377-5p ; hsa-mir-4459 ; hsa-mir-4487 ; hsa-mir-4497 ; hsa-mir-455-3p ; hsa-mir-5186 ; hsa-mir-550b-2-5p ; hsa-mir-558 ; hsa-mir-6086 ; hsa-mir-6087 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-658 ; hsa-mir-1273e ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-298 ; hsa-mir-3612 ; hsa-mir-3622a-3p ; hsa-mir-3622b-3p ; hsa-mir-3664-3p ; hsa-mir-3929 ; hsa-mir-4257 ; hsa-mir-4419b ; hsa-mir-4433a-3p ; hsa-mir-4478 ; hsa-mir-4537 ; hsa-mir-4649-3p ; hsa-mir-4695-5p ; hsa-mir-4768-3p ; hsa-mir-485-5p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-665 ; hsa-mir-6765-3p ; hsa-mir-6840-3p ; hsa-mir-6884-5p ; hsa-mir-7160-5p

Nearest miRNA

hsa-mir-1265/Upstream/738383; hsa-mir-107/Downstream/27868;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/281010, chr10-CpG: 26/Downstream/8303

Upstream sequence

AACACTGggccgggcgcagtggctcacgcttgtaatcccagcactttgggacatggaggtgggcagatcacctgaggtcaagagttcaagaccagcctgg

Downstream sequence

ccaacatggtgaaacctcgcctctactaaaaatacaaaaattagccaggcgtggtggcaggtgtctgtaagtccagctacttggaaggctgaggcaggag