Basic Information
VIS ID
TVIS30004379
Fusion event
HIV-LOC105376481 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
31382265/31093336 (Hg38)
End
31382265/31093336 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376481
Nearest miRNA
hsa-mir-1265/Upstream/724671; hsa-mir-107/Downstream/3986262;
Nearest TSS
ENST00000439456/Upstream/61399; ENST00000605929/Downstream/94547;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/60907, chr10-CpG: 49/Downstream/40444
Nearby gene
ZNF438(No orient, 61399)
Upstream sequence
ATTCTCCACTTTGGTGAATACACCCATTTCTAAAACGATGATCCCAAAGGAGGAACTCCTTACCTCCCATATGGCTCTAGGCTGGTGTCCCCAAGATCAC
Downstream sequence
CGAAGACTAATGATATGTGGAAGCAGGAAAGATCACATGCCCTTTCCCAAGAGCAATGTAAGAATTTGGAAAAATCATGTCCTGTTTCCTCCTGTAACTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate