Basic Information
VIS ID
TVIS30004392
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.5
Reference genome
GRCh37/hg19
Start
765249/765249 (Hg38)
End
765249/765249 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/197051; hsa-let-7a-2/Downstream/491356;
Nearest TSS
ENST00000527297/Upstream/879; ENST00000526588/Downstream/6121;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1824, chr11-CpG: 140/Downstream/11554
Nearby gene
TALDO1(No orient, 225)
Nearest cancer related gene
TALDO1(OG, No orient, 225)
Upstream sequence
GCCACCACCTGGGAACCCAGGTCAGGGTTGTTGCTGGGAGGCCATTGGTGGAGTTAGGCAAAGGGCAGGCTTCTGATGCCAGGGGCTCCCAAGGTGCTGT
Downstream sequence
CCCAGGTGGGTCACAGATGAACAGTCTCAAGCCTCCAAGCGTGGGCAGATGTGGATGCCTCTCAGAGGAGCAGTCCCAGCCGGACCCTCCCTCCTGCTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate