Basic Information
VIS ID
TVIS30004394
Fusion event
HIV-NAP1L4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
2981210/2959980 (Hg38)
End
2981210/2959980 (Hg38)
Orient
-
Location type
Intronic
Target gene
NAP1L4
miRNAs that regulate target gene
hsa-mir-196a-5p ; hsa-mir-6840-3p ; hsa-mir-659-5p ; hsa-mir-1324 ; hsa-mir-1228-3p ; hsa-mir-4524b-3p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-4291 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-4261 ; hsa-mir-8064 ; hsa-mir-875-3p ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-922 ; hsa-mir-10b-3p ; hsa-mir-512-5p ; hsa-mir-3120-3p
Nearest miRNA
hsa-mir-210/Upstream/786842; hsa-let-7a-2/Downstream/896082;
Nearest TSS
ENST00000527297/Upstream/1046; ENST00000332881/Downstream/151;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/15108, chr11-CpG: 149/Downstream/31589
Upstream sequence
GGTTCAAAGTGGAACTCTAACACAAAAGACTAAAAGTAGAAATTCAGAGTAAGCACCAGTTAAAATAGAAAAATAACGAGGACAGATTGCTTGGAGTACA
Downstream sequence
CAACACTTACTAGAAGCTATTTTGGGAAAGCTCAACAGATAGGGCCATGAACAAGAAAAACTTCTCCACCGCAAAAAAGACTAGCGTGAGGTTAAAAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate