Basic Information
VIS ID
TVIS30004401
Fusion event
HIV-TUT1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
62353509/62586037 (Hg38)
End
62353509/62586037 (Hg38)
Orient
+
Location type
Intronic
Target gene
TUT1
miRNAs that regulate target gene
hsa-mir-1301-3p ; hsa-mir-129-2-3p ; hsa-mir-93-3p ; hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-503-5p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-324-5p ; hsa-mir-331-3p ; hsa-mir-342-3p ; hsa-mir-193a-3p ; hsa-mir-183-5p ; hsa-mir-93-5p ; hsa-mir-92a-3p ; hsa-mir-26a-5p ; hsa-mir-18a-5p ; hsa-mir-17-5p ; hsa-let-7c-5p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-129-2/Upstream/18966; hsa-let-7a-2/Downstream/203778;
Nearest TSS
ENST00000527297/Upstream/8716; ENST00000532626/Downstream/5486;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/11814, chr11-CpG: 72/Downstream/5304
Upstream sequence
actaaaaatacaaaattagccaggcgcggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccgggagccagag
Downstream sequence
tttgcggtgagctgagatcgccccaagccaagttcgcgccactgcattccagcctgggcaacaagggcaaaactccatctcaaataaataaataaataaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate