Basic Information
VIS ID
TVIS30004405
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
63972631/64205159 (Hg38)
End
63972631/64205159 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA11H
Nearest miRNA
hsa-mir-129-2/Upstream/1412388; hsa-let-7a-2/Downstream/136690;
Nearest TSS
ENST00000527297/Upstream/2754; ENST00000541252/Downstream/1519;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/18403, chr11-CpG: 18/Downstream/2198
Nearby gene
STIP1(No orient, 611)
Upstream sequence
gcctgctaccacacccagctaattattatattttagtggagacaggtgtttcgccatattggccaggctagtctcgaactcctgacctcaagtgatccac
Downstream sequence
ccgcctcaacctcccaaagtgctgggattacaggcatgagccactgcacccCACTGGGTGATGGGttttttttgtttgtattttttgagatggtgtctct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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