Basic Information
VIS ID
TVIS30004406
Fusion event
HIV-FERMT3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
63981304/64213832 (Hg38)
End
63981304/64213832 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
FERMT3
Nearest miRNA
hsa-mir-129-2/Upstream/1421061; hsa-let-7a-2/Downstream/128017;
Nearest TSS
ENST00000527297/Upstream/2128; ENST00000540957/Downstream/5645;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/6256, chr11-CpG: 33/Downstream/12285
Upstream sequence
tttttagtagagatggacggggtttctccatgttggtcagactggtctcgaactcctgacctcaggtgatttgcccactttggcctcccaaagtgctggg
Downstream sequence
attacaggcgtgagccacggcgtcgggccAGCTGTGCctttttattctagtgttttcttctctatgacatatttccacttctttgttttgccatttcaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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