Basic Information
VIS ID
TVIS30004420
Fusion event
HIV-TBC1D10C integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
67172850/67405379 (Hg38)
End
67172850/67405379 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
TBC1D10C
Nearest miRNA
hsa-mir-10392/Upstream/359671; hsa-let-7a-2/Downstream/84866;
Nearest TSS
ENST00000527297/Upstream/131; ENST00000524662/Downstream/1885;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/3397, chr11-CpG: 22/Downstream/4095
Upstream sequence
CCTCCGGCCTTTGCTCCCTGCCACCCAAAGTGGGCCCCTGCCTGCTGATGAGCTGTGCCTGGGGCCTGCCAGCAGGAGCTATGGAGGCTGCCTAGTGGAG
Downstream sequence
CCCTTGGCCTCACCCACAGGTAAAGATGCAGTGCCGGAAAGGCATCCCGTCTGCCCTGCGCGCCCGATGCTGGCCCCTGTTGTGTGGGGCCCATGTGTGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate