Basic Information
VIS ID
TVIS30004437
Fusion event
HIV-NOP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
6673129/6563963 (Hg38)
End
6673129/6563963 (Hg38)
Orient
+
Location type
Intronic
Target gene
NOP2
miRNAs that regulate target gene
hsa-mir-128-3p ; hsa-mir-101-3p ; hsa-mir-26b-5p ; hsa-mir-1301-3p ; hsa-mir-1226-3p ; hsa-mir-935 ; hsa-mir-744-5p ; hsa-mir-296-3p ; hsa-mir-615-3p ; hsa-mir-331-3p ; hsa-mir-342-3p ; hsa-mir-361-5p ; hsa-mir-10a-5p ; hsa-mir-100-5p ; hsa-mir-15a-5p
Nearest miRNA
hsa-mir-3649/Upstream/4903583; hsa-let-7i/Downstream/399736;
Nearest TSS
ENST00000382841/Upstream/209; ENST00000501075/Downstream/342;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/7828, chr12-CpG: 70/Downstream/3870
Upstream sequence
TCCATCCCAATAGCTTCCAAAACTCACCCAGCAGCAGCTTCCCGGGCCTTCTGCTTCCGAGCAGCTCTTTCAATGGGCAGCAACTGAAGAGAGACAAGGG
Downstream sequence
CTATTAATACAGGCCTGCCCTTCCATCAGCCCTTGTAGCAGTTCTATCTCTATATCTTATTTTTTCGCTAAATAAAAATCCAACACTTGCTCTCAGAAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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