VISDB Viral Integration Site DataBase

VIS ID

TVIS30004438

Fusion event

HIV-CHD4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

p13.31

Reference genome

Start

End

6690628/6581462 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-491-5p ; hsa-mir-193b-3p ; hsa-mir-98-5p ; hsa-let-7b-5p ; hsa-mir-877-3p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-197-3p ; hsa-mir-17-5p ; hsa-mir-15a-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-5681b ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-5589-5p ; hsa-mir-5189-3p ; hsa-mir-4774-5p ; hsa-mir-6891-5p ; hsa-mir-3065-5p ; hsa-mir-3173-3p ; hsa-mir-497-3p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-766-5p ; hsa-mir-6069 ; hsa-mir-3692-3p ; hsa-mir-4436b-5p ; hsa-mir-6509-3p ; hsa-mir-205-3p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-4729 ; hsa-mir-6746-3p ; hsa-mir-659-3p ; hsa-mir-29b-2-5p ; hsa-mir-491-3p ; hsa-mir-3140-3p ; hsa-mir-1229-3p ; hsa-mir-6826-3p ; hsa-mir-210-5p ; hsa-mir-4749-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-4469 ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-361-3p ; hsa-mir-6890-3p ; hsa-mir-483-3p ; hsa-mir-1193 ; hsa-mir-3689d ; hsa-mir-370-5p ; hsa-mir-3934-3p ; hsa-mir-6134 ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-767-3p ; hsa-mir-7847-3p

Nearest miRNA

hsa-mir-3649/Upstream/4921082; hsa-let-7i/Downstream/382237;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/12873, chr12-CpG: 120/Downstream/24872

Upstream sequence

ATTTTCCTCTATTTTTATCCCATCTTCTGCAGAACAATAAAAGACAATCAATTAGGAAGAAGGTACTAGATCAGAGAGAAGGTCATTTCTTCCCAGTTTG

Downstream sequence

TCTCATCTTAAATTGTCCTCTCGTGCCTTTAAGAGCCAGCCCTATTCTTAGGACGGCCCTCCTAAACTGAGAGGGAATTGCTGTGTGTCCTGCCAGACTA