Basic Information
VIS ID
TVIS30004439
Fusion event
HIV-ZNF384 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
6782886/6673720 (Hg38)
End
6782886/6673720 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZNF384
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-1-3p ; hsa-mir-155-5p ; hsa-mir-93-5p ; hsa-mir-1304-3p ; hsa-mir-374a-5p ; hsa-mir-7850-5p ; hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-4653-3p ; hsa-mir-2052 ; hsa-mir-1303 ; hsa-mir-5096 ; hsa-mir-4435 ; hsa-mir-222-5p ; hsa-mir-197-3p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-3190-5p ; hsa-mir-3129-5p ; hsa-mir-199b-3p ; hsa-mir-199a-3p ; hsa-mir-936 ; hsa-mir-483-5p ; hsa-mir-892b ; hsa-mir-193b-3p ; hsa-mir-193a-3p ; hsa-mir-4284 ; hsa-mir-4772-3p ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-129-5p ; hsa-mir-3180-5p ; hsa-mir-329-5p
Nearest miRNA
hsa-mir-3649/Upstream/5013340; hsa-let-7i/Downstream/289979;
Nearest TSS
ENST00000382841/Upstream/325; ENST00000602759/Downstream/4822;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/10307, chr12-CpG: 47/Downstream/15501
Upstream sequence
aatattcaataaatgtttgctgaatgactggaCTGCCTCCATGTGCAAAAATGTATTTCAACCAGATAAAACAGAAACAGTATGAACTCTGGGCAGATGC
Downstream sequence
GAATTTCAATGGGCCAGGAATATCAGTTAACTTGTTTGCCTTCTGCTTACAGCTTGATTTCAAACATTTAAGGAATTCCTTGCTCTGATGTTCCTATGTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate