Fusion event
HIV-PRH1-PRR4 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
11217582/11064983 (Hg38)
Location type
ncRNA_intronic
Nearest miRNA
hsa-mir-1244-3/Upstream/1825432; hsa-let-7i/Downstream/1046969;
Upstream sequence
actgtgtctacaataaatgaaaaagccaggcataaggaagctactcacaaggctgaggtgggaggatggtttgatcccgggagttccagactgcagtaag
Downstream sequence
ccatgatcctaccactgaactccagcctggacaccagattgagactcCAACTCCACATAGAATAATACTGATAATAATAATAATTTTTCTATTATCTGAA
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.